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中华诊断学电子杂志 ›› 2023, Vol. 11 ›› Issue (03) : 184 -189. doi: 10.3877/cma.j.issn.2095-655X.2023.03.008

临床研究

系统性红斑狼疮患者长链非编码RNA表达变化及其与CD8+T细胞相关性研究
范茹, 刘宇清, 胡晓榕, 王轶奇, 张芬, 岑星, 卜玉洁, 陈俊伟()   
  1. 030001 太原,山西医科大学第二医院风湿免疫科
    030000 太原,山西医科大学基础医学院
    710018 西安,西北大学附属医院西安市第三医院风湿免疫科
  • 收稿日期:2023-02-12 出版日期:2023-08-26
  • 通信作者: 陈俊伟
  • 基金资助:
    山西省自然科学基金面上项目(20210302123275)

Changes of lncRNA expression and its correlation with CD8+ T cells in patients with systemic lupus erythematosus

Ru Fan, Yuqing Liu, Xiaorong Hu, Yiqi Wang, Fen Zhang, Xing Cen, Yujie Bu, Junwei Chen()   

  1. Department of Rheumatology and Immunology, the Second Hospital of Shanxi Medical University, Taiyuan 030001, China
    School of Basic Medicine, Shanxi Medical University, Taiyuan 030000, China
    Department of Rheumatology and Immunology, Xi′an No.3 Hospital, the Affiliated Hospital of Northwest University, Xi′an 710018, China
  • Received:2023-02-12 Published:2023-08-26
  • Corresponding author: Junwei Chen
引用本文:

范茹, 刘宇清, 胡晓榕, 王轶奇, 张芬, 岑星, 卜玉洁, 陈俊伟. 系统性红斑狼疮患者长链非编码RNA表达变化及其与CD8+T细胞相关性研究[J]. 中华诊断学电子杂志, 2023, 11(03): 184-189.

Ru Fan, Yuqing Liu, Xiaorong Hu, Yiqi Wang, Fen Zhang, Xing Cen, Yujie Bu, Junwei Chen. Changes of lncRNA expression and its correlation with CD8+ T cells in patients with systemic lupus erythematosus[J]. Chinese Journal of Diagnostics(Electronic Edition), 2023, 11(03): 184-189.

目的

探讨系统性红斑狼疮(SLE)患者长链非编码RNA(lncRNA)的表达变化及其与CD8+T细胞数量和疾病活动的关系。

方法

选择2020年7月至12月在山西医科大学第二医院风湿免疫科住院的SLE患者9例,选取同期本院健康体检中心的9例健康者为对照组。从外周血单个核细胞中提取RNA,用全转录组测序分析lncRNA表达谱,筛选差异表达的lncRNA。比较两组CD8+T细胞计数,并分析差异表达的lncRNA与CD8+T细胞数量及SLE患者临床特征的相关性。

结果

与健康对照组比较,SLE患者有240个差异表达lncRNA,其中134个高表达,106个低表达,并且AL450352.1(r=0.755,P=0.030)、LINC00944(r=0.824,P=0.012)的表达量与外周血CD8+T细胞计数呈正相关,PSORS1C3(r=-0.784,P=0.021)、TDRG1(r=-0.808,P=0.015)、MIR3150BHG(r=-0.707,P=0.049)、AC000403.1(r=-0.726,P=0.040)、AL034550.2(r=-0.762,P=0.028)、AC099524.1(r=-0.714,P=0.047)、HOMER3-AS1(r=-0.760,P=0.029)的表达量与外周血CD8+T细胞计数呈负相关。其中HOMER3-AS1与SLE患者24 h尿蛋白呈正相关(r=0.774,P=0.024)。

结论

SLE患者lncRNA表达谱发生变化,部分差异表达的lncRNA与CD8+T细胞数量相关,并可能通过影响SLE患者CD8+T细胞数量进而影响SLE患者肾脏功能。

Objective

To explore the relationship between differential long non-coding RNA (lncRNA) expressions, the number of CD8+ T cells, and disease activity in systemic lupus erythematosus (SLE) patients.

Methods

From July to December 2020, 9 hospitalized SLE patients at the Rheumatology and Immunology Department of Shanxi Medical University′s Second Hospital were chosen, and 9 healthy patients from the hospital′s physical examination center were chosen as the healthy control group at the same time. To identify differentially expressed lncRNA, peripheral blood mononuclear cells were collected and their lncRNA expression patterns were evaluated using whole transcriptome sequencing. CD8+ T cell count in the two groups was compared, and the relationships between differentially expressed lncRNA and CD8+ T cell count and clinical characteristics in SLE patients were investigated.

Results

SLE patients had 240 differently expressed lncRNAs when compared to healthy control group, including 134 highly expressed lncRNAs and 106 weakly expressed lncRNAs. The expression of AL450352.1(r=0.755, P=0.030) and LINC00944(r=0.824, P=0.012) were positively correlated with the number of CD8+ T cells, and the expression of PSORS1C3 (r=-0.784, P=0.021), TDRG1(r=-0.808, P=0.015), MIR3150BHG (r=-0.707, P=0.049), AC000403.1(r=-0.726, P=0.040), AL034550.2(r=-0.762, P=0.028), AC099524.1(r=-0.714, P=0.047), HOMER3-AS1 (r=-0.760, P=0.029) were negatively correlated with the number of CD8+ T cells.HOMER3-AS1, which was negatively correlated with peripheral blood CD8+ T cells, was positively correlated with 24-hour proteinuria in patients with SLE(r=0.774, P=0.024).

Conclusion

The expression profile of lncRNAs changes in SLE patients, and certain differentially expressed lncRNAs are connected with the number of CD8+ T cells in SLE patients, which may further impair SLE patients′ kidney function by influencing the number of CD8+ T cells.

图1 SLE组与健康对照组的主成分分析注:红色代表SLE组,蓝色代表健康对照组。两组之间的差异越大,数据越有意义。SLE为系统性红斑狼疮
图2 SLE组和健康对照组lncRNA层次聚类热图分析注:SLE组(蓝条)和健康对照组(红条)样本。表达值用红色和蓝色表示,分别表示所有样本中表达值高于和低于中值的表达。lncRNA为非编码RNA;SLE为系统性红斑狼疮
图3 SLE组与健康对照组火山图分析注:红点表示上调的DElncRNA,蓝点表示下调的DElncRNA。垂直虚线表示|lgFC|=0.58,平行虚线表示adj.P=0.05,绿色点表示|lgFC|>2的lncRNA;lncRNA为非编码RNA;DElncRNA为差异表达的lncRNA;SLE为系统性红斑狼疮
表1 SLE患者lncRNA与CD8+T细胞数量相关性分析
表2 CD8+T细胞数量相关lncRNA与SLE患者临床资料相关性分析结果
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